pyDynamo documentation

Application for the UI and analysis of neurons via Dynamic Morphometrics.

See the interactive dendritic arbor timelapse for a taste of what pyDynamo produces.

Getting Started

• Installation
  • Quick install
  • Updating
• Quickstart
  • 1. Launch
  • 2. Start a new project
  • 3. Trace the first timepoint
  • 4. Move to the next timepoint
  • 5. Key shortcuts

Gallery

• Dendritic arbor timelapse

User Guide

• Stacks
  • Initial options
  • Stack list
• Drawing
  • Moving
  • Reparenting
  • Fixing Branches
  • Other
• Registration
  • Automatic registration
  • Manual registration
  • Location-based registration
• Puncta
  • Drawing
  • Analysis

API Reference

• FullState
  • Attributes
• Model objects
  • Tree, Branch, and Point
  • Tree Class
  • Branch Class
  • Point Class
• Analysis methods
  • TDBL (Total Dendritic Branch length)
  • Motility
  • Added/Subtracted/Transitioned
• Examples
  • Example of using Dynamo in Python