FullState¶

FullState is the central container class for a project’s state. It stores paths, image data, neuronal reconstructions, puncta, traces, and associated UI state, and provides helper methods for manipulating them.

Many of the methods for FullState are used for controlling the flow of information when interacting with Dynamo files through the GUI. The attributes of this object are also key for interacting with Dynamo programmatically.

Attributes¶

Name	Type	Description
`_rootPath`	`Optional[str]`	Root path where this project is saved.
`filePaths`	`List[str]`	Paths to `.tif` image stacks.
`trees`	`List[Tree]`	Neuronal tree data (one per stack).
`puncta`	`List[List[Point]]`	Puncta annotations (per stack).
`traces`	`List[str]`	Paths to `.nwb` trace files (per stack).
`uiStates`	`List[UIState]`	UI state objects, aligned with stacks.
`projectOptions`	`ProjectOptions`	Global project options.
`volumeSize`	`Optional[List[int]]`	`[channels, x, y, z]` volume dimensions. Must match across stacks.
`channel`	`int`	Active channel index (default: `0`).
`drawMode`	`DrawMode`	Current drawing mode (`DEFAULT`, `PUNCTA`, `RADII`, `REGISTRATION`)